2026
Monitoring Changes in Clinical Trial Primary Outcomes Using Large Language Models
I Bulovic, S Wunnava, W Yoon, AG Dunn, T Miller, FT Bourgeois
JAMA Network Open 9(9):e2634214 · Research Letter
Publications† joint first authors.
Google Scholar profile
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Type
32 publications
Peer-reviewed archival papers
Journal articles and archival conference proceedings reviewed as complete manuscripts.
2026
Substituting Radiology Reports for Chest Radiographs does not preserve prediction behavior in Post-Discharge Mortality Prediction
C Kim, W Yoon, H Lee, J Lee, M Afshar, J Kang, T Miller
Accepted for publication in JAMIA Open
2026
End-to-end extraction of temporal information from psychiatric discharge summaries
S Thomas, G Dinh, W Yoon, B Ren, G Savova, MH Hall, TA Miller
AMIA Joint Summits on Translational Science Proceedings, 458–467
2026
A Dataset of Psychiatric Hospital Notes with Temporal Information Annotations
TA Miller, G Dinh, D Harris, W Yoon, S Thomas, B Ren, MH Hall, G Savova
LREC 2026, 7479–7484
2025
Aspect-Oriented Summarization for Psychiatric Short-Term Readmission Prediction
W Yoon, B Ren, S Thomas, C Kim, G Savova, MH Hall, T Miller
EMNLP 2025, 28037–28054
2025
Using tournaments to calculate AUROC for zero-shot classification with LLMs
W Yoon, I Bulovic, TA Miller
Findings of EMNLP 2025, 23583–23591
2025
LCD benchmark: long clinical document benchmark on mortality prediction for language models
W Yoon, S Chen, Y Gao, Z Zhao, D Dligach, DS Bitterman, M Afshar, T Miller
Journal of the American Medical Informatics Association 32(2), 285–295
2025
Cross-Site Predictions of Readmission After Psychiatric Hospitalization With Mood or Psychotic Disorders: Retrospective Study
B Ren, W Yoon, S Thomas, G Savova, T Miller, MH Hall
JMIR Mental Health 12, e71630
2025
Overview of the 2025 shared task on chemotherapy treatment timeline extraction
J Yao, H Hochheiser, W Yoon, E Goldner, G Savova
ClinicalNLP 2025, 1–10
2024
Overview of the 2024 shared task on chemotherapy treatment timeline extraction
J Yao, H Hochheiser, W Yoon, E Goldner, G Savova
ClinicalNLP 2024, 557–569
2023
Biomedical relation extraction with knowledge base-refined weak supervision
W Yoon, S Yi, R Jackson, H Kim, S Kim, J Kang
Database 2023, baad054
2022
2022
Data-centric and model-centric approaches for biomedical question answering
W Yoon, J Yoo, S Seo, M Sung, M Jeong, G Kim, J Kang
CLEF 2022, LNCS 13390, 204–216
Nominated as the Best Paper of CLEF 2021 Labs and accepted to the Best of 2021 Labs track.
2022
Pandemics are catalysts of scientific novelty: Evidence from COVID-19
M Liu, Y Bu, C Chen, J Xu, D Li, Y Leng, RB Freeman, ET Meyer, W Yoon, M Sung, M Jeong, J Lee, J Kang, C Min, M Song, Y Zhai, Y Ding
Journal of the Association for Information Science and Technology 73(8), 1065–1078
Selected as a cover paper of JASIST volume 73, issue 8.
2022
2022
Full-text chemical identification with improved generalizability and tagging consistency
H Kim, M Sung, W Yoon, S Park, J Kang
Database 2022, baac074
2020
Answering questions on COVID-19 in real-time
J Lee, SS Yi, M Jeong, M Sung, W Yoon, Y Choi, M Ko, J Kang
NLP-COVID19 at EMNLP 2020
2020
2020
Pre-trained Language Model for Biomedical Question Answering
W Yoon, J Lee, D Kim, M Jeong, J Kang
ECML PKDD 2019, CCIS 1168, 727–740
2019
A neural named entity recognition and multi-type normalization tool for biomedical text mining
D Kim, J Lee, CH So, H Jeon, M Jeong, Y Choi, W Yoon, M Sung, J Kang
IEEE Access 7, 73729–73740
2019
Peer-reviewed working notes and shared-task papers
2023
Exploring Approaches to Answer Biomedical Questions: From Pre-processing to GPT-4
H Kim, H Hwang, C Lee, M Seo, W Yoon, J Kang
CLEF 2023 Working Notes, BioASQ Task 11b, 132–144
2022
KU_ED at SocialDisNER: Extracting Disease Mentions in Tweets Written in Spanish
A Lain, W Yoon, H Kim, J Kang, I Simpson
SMM4H 2022 Workshop & Shared Task, 78–80
2020
Transferability of Natural Language Inference to Biomedical Question Answering
M Jeong†, M Sung†, G Kim, D Kim, W Yoon, J Yoo, J Kang
CLEF 2020 Working Notes, BioASQ Task 8b
Under review, preprints, and ongoing work
2026
CLSGen: A Dual-Head Fine-Tuning Framework for Joint Probabilistic Classification and Verbalized Explanation
W Yoon†, K Zhu†, I Bulovic, A Sehy, Y Gao, D Dligach, M Afshar, TA Miller
arXiv:2604.11801
2026
Comparing prognostic performance and reasoning between large language models and physicians
M Gjertsen†, W Yoon†, M Afshar, B Temte, B Leding, S Halliday, K Bradley, J Kim, J Mitchell, AK Sanders, E Croxford, J Caskey, M Churpek, A Mayampurath, Y Gao, T Miller, JM Kruser
medRxiv 2026.04.17.26350898
2026
Automated assessment of outcome reporting bias and safety signals across clinical trials using a domain-adapted language model
X Zhang, Q Hu, A Pan, I Bulovic, W Yoon, S Wunnava, T Miller, J Kim, F Bourgeois, A Dunn
Under review
2025
Medical hallucinations in foundation models and their impact on healthcare
Y Kim, H Jeong, S Chen, S Li, C Park, M Lu, K Alhamoud, J Mun, C Grau, M Jung, R Gameiro, L Fan, E Park, T Lin, J Yoon, W Yoon, M Sap, Y Tsvetkov, P Liang, X Xu, X Liu, C Park, H Lee, H Park, D McDuff, S Tulebaev, C Breazeal
Under review · arXiv:2503.05777
Selected conference abstracts
2026
Multimodal Fusion of Structured EHR Data and Clinical Notes for 30-Day Mortality Prediction
MT Saban, S Tootooni, W Yoon, T Miller, D Dligach
Accepted poster, AMIA 2026 Annual Symposium, November 7–11
2026
Comparing prognostic performance and reasoning between physicians and large language models
M Gjertsen†, W Yoon†, M Afshar, E Croxford, JR Caskey, Y Gao, TA Miller, JM Kruser
Podium presentation, AAHPM Annual Assembly, March 7 · JPSM 71(6), e903–e904
2025
Using Language Models for Psychiatric Short-Term Readmission Prediction
W Yoon
Oral presentation, Technology in Psychiatry Summit, December 12
2025
Detection and Monitoring of Potential Outcome Reporting Bias Using Large Language Models: Application to FDA-Regulated Drug Trials
I Bulovic, S Wunnava, W Yoon, A Dunn, T Miller, F Bourgeois
Oral presentation, Peer Review Congress, September 3–5
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